suba logo
AT2G13650.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : golgi nucleotide sugar transporter 1
Curator
Summary (TAIR10)
Encodes a Golgi-localized GDP-mannose transporter.
Computational
Description (TAIR10)
golgi nucleotide sugar transporter 1 (GONST1); BEST Arabidopsis thaliana protein match is: golgi nucleotide sugar transporter 2 (TAIR:AT1G07290.1); Has 1741 Blast hits to 1741 proteins in 244 species: Archae - 2; Bacteria - 16; Metazoa - 451; Fungi - 288; Plants - 806; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).
Protein Annotations
BioGrid:1211eggNOG:COG5070eggNOG:KOG1444EMBL:AC007063
EMBL:AJ314836EMBL:BT030001EMBL:CP002685EnsemblPlants:AT2G13650
EnsemblPlants:AT2G13650.1EnsemblPlants:AT2G13650.3entrez:815850GeneID:815850
Genevisible:Q941R4GO:GO:0000139GO:GO:0005338GO:GO:0005458
GO:GO:0005794GO:GO:0008643GO:GO:0015784GO:GO:0016021
GO:GO:1901679GO:GO:1990570hmmpanther:PTHR11132hmmpanther:PTHR11132:SF81
HOGENOM:HOG000005730InParanoid:Q941R4IntAct:Q941R4InterPro:IPR004853
KEGG:ath:AT2G13650KO:K15356OMA:TRSFCVDPaxDb:Q941R4
Pfam:PF03151Pfam:Q941R4PhylomeDB:Q941R4PIR:E84509
PRIDE:Q941R4PRO:PR:Q941R4ProteinModelPortal:Q941R4Proteomes:UP000006548
RefSeq:NP_001189524.1RefSeq:NP_565357.1RefSeq:NP_849952.1STRING:3702.AT2G13650.1
TAIR:AT2G13650tair10-symbols:GONST1TCDB:2.A.7.13.3TMHMM:TMhelix
UniGene:At.30812UniGene:At.69157UniProt:Q941R4
Coordinates (TAIR10) chr2:-:5687584..5690303
Molecular Weight (calculated) 36841.90 Da
IEP (calculated) 9.67
GRAVY (calculated) 0.59
Length 333 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLYEHDGVD LEDGKTVKSG GDKPIPRKIH NRALLSGLAY CISSCSMILV NKFVLSSYNF NAGIFLMLYQ NFVSVIIVVG LSLMGLITTE PLTLRLMKVW
101: FPVNVIFVGM LITSMFSLKY INVAMVTVLK NVTNVITAVG EMYLFNKQHD NRVWAALFLM IISAVSGGIT DLSFNAVGYA WQIANCFLTA SYSLTLRKTM
201: DTAKQVTQSG NLNEFSMVLL NNTLSLPLGL LLSYFFNEMD YLYQTPLLRL PSFWMVMTLS GLLGLAISFT SMWFLHQTGA TTYSLVGSLN KIPLSIAGIV
301: LFNVPTSLQN SASILFGLVA GVVFARAKMR EKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)