AT2G13640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transcription factor IIS family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transcription factor IIS family protein; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617); BEST Arabidopsis thaliana protein match is: Transcription factor IIS family protein (TAIR:AT5G27310.1); Has 1456 Blast hits to 1088 proteins in 195 species: Archae - 3; Bacteria - 172; Metazoa - 379; Fungi - 62; Plants - 135; Viruses - 4; Other Eukaryotes - 701 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:5686136..5687290 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44466.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.75 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.80 | ||||||||||||||||||||||||||||||||
| Length | 384 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIKNDGKMMR VRIAKERSDL CDLTAAAIKA TYNTRNPCEV ERCIDVLNHL KSLSLSVKDI RLSESIVKLE TLRSHRNPRI RKEAQALFHS WLKTFYAHGS 101: DNSFTAALTK DRLKMKKHVL KMCSELKKKE EPGTMARQVT AFSVLKNKED ERSQTTVEAV ESKTTIKLSE LNRKEDQRSL TRETEKNKAR NSFLALKQKE 201: DHRSETCVEK YFKKETKTNL KQLNMKTRRV SLEDVTTKKP HEDGSLIKKT KTEKELKKKK VDEMVKLFEA AKKAADVANA KGVLSGKPEV SRCIDALSLL 301: MKINITPKPK EPRRMMDKLE GLTKHKDRKI CHVASALLHL WRQRIREQER KKSVTKASSK TRKLSYVKII WLEQIKVSCG FKRF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)