AT2G12940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.676 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Basic-leucine zipper (bZIP) transcription factor family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unfertilized embryo sac 4 (UNE4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT2G13150.1); Has 1144 Blast hits to 1139 proteins in 129 species: Archae - 0; Bacteria - 2; Metazoa - 510; Fungi - 17; Plants - 518; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:5317513..5319089 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33321.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.60 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.76 | ||||||||||||||||||||||||||||||||||||
| Length | 294 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNGSDNTTPS RPWSITQPSL AFSSLPPLSP SPSSSRRNSL PLMNPSTSME SRDSSMRFKK NSLLPPLGVK KIAPKDIGPL KRHYRSVSMD SCLSDLLKLT 101: PSPGNTPSSR LVDGDQNASR LEFDANDYTD DELNKIAKSN KLKEVALDPK EVRRILKNRE SAAHLKQKKL QYMINLEHRI NFVENENASI FEKIKLLEND 201: KTMMMNEKKE IMIRIESMEI QAQLRDVLTE HLHGESERLK AALISNENGN GKVQKLRMAT CEVLQNRHEF DKSNMEVMDS NMINWSQPNP GFNG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)