AT2G12900.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.938 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Basic-leucine zipper (bZIP) transcription factor family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Basic-leucine zipper (bZIP) transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT2G12940.1); Has 1373 Blast hits to 1364 proteins in 175 species: Archae - 2; Bacteria - 73; Metazoa - 486; Fungi - 39; Plants - 637; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:5293897..5295480 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30071.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.29 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||
| Length | 264 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNGSDNITTP SGSRSMTQPS LASSSLPPLS PSSSTFRRNS LPSMSFSPSA PVESRDSSIK VNKNPSLPPL VDGEEDASWL EFGSSDYTDD ELNKIAKSTK 101: LQDIAKSTKL QEIVSDPKKV RRILKNRELA ASSKQRKLKY MIDLEHRIKF LENKNALIFE KIKLLEKDKT ILMNEKKEIT IQIESLEQQA QLRDALTEKL 201: HVEIERLKVI TISNEKGSVE LQRLKMETCE VLQYRREFDR SNMQGMDPNM FTWSQPNLGF YGQI |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)