AT2G12880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.519 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Zinc knuckle (CCHC-type) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); Has 1882 Blast hits to 1172 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 625; Fungi - 503; Plants - 261; Viruses - 159; Other Eukaryotes - 334 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:5291523..5291882 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 14205.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.53 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.10 | ||||||||||||||||||||||||||||||||
| Length | 119 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAPKFTLNQE RDNDRERTRA SYNNDRRRND YDPRACYKCG KLGHFARSCH VVTQPTTAYI TCYFCSEEGH RSNGCPNKRT DQVNPKGHCY WCGNQDHRFN 101: LIIWRSRCLF RLMKPKYAF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)