AT2G12475.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Defensin-like (DEFL) family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a defensin-like (DEFL) family protein. | ||||||||||||||||||||||||
| Computational Description (TAIR10) |
Defensin-like (DEFL) family protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 50 (TAIR:AT2G12465.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:-:5068490..5068853 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 9331.42 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.49 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||
| Length | 85 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
1: MAISKKMLTT FVLTILLAVS FVHCSDRTSG VGINQEYAKC YDLADCQKPK VDDAACERFC GAKSFLLYGK CDTATNKCCC KSKTK | ||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)