AT2G10550.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Most likely an inactive paralog of the uracil DNA glycosylase AtUNG (At3g18630) generated by a gene duplication event and subsequently disrupted by transposon insertions (PubMed ID: 20056608). | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: uracil dna glycosylase (TAIR:AT3G18630.1); Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:-:4096001..4096920 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 18494.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.64 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||
| Length | 170 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALSTPKTLM DFFQPAKRLK ASPSSSSSFP AVSVAGRSRD LGSVANSPPR VTVTTAVADD SSGLTPEQVA RAEFHKFVAK SKSNLAVCSV KVTKAKGLIL 101: IMDLVKLWVY PSMCLKEKSP SSLLNIFKEL HKDVGDKLHM VYFRRNKKEN VSHVTSLAVE DVTGITRTKG |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)