AT2G07760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.719 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Zinc knuckle (CCHC-type) family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28823.1); Has 107 Blast hits to 101 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 8; Plants - 87; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:3584420..3586278 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57079.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.52 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||
| Length | 530 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNSVSVLTQG KETEVGPKVV VVDSSNVNSV PDPRWPYLTR WTQNSPSPSP SVISPSISLV KPLTIGSSPK IARSSSLDFV NLTSSLDSTL PVTVEPPIEH 101: VVSITSLSYS AEVSLPTSAL PPIVSATLDE SIAPVKLVSP TLKGAWAKQL KFTSSSASQQ DVGGAPMQSH LEATKEDNVR FPWAAKMDPA ARNLYRATSP 201: EFMEDGIPKR GLWHVDDCLM FVAPWSTVNT FDLPEISTIP VWVTLKNIPN RLYSILGISH IASGLGAPMA TYKPRLDPSL MSEANILVEV ELSKAFPPRI 301: AAVDKKGNIS MVNVEYAWIP AKCGKCGQLG HKASRCMKPH LAHEKVTEIV SEEIITPAIV SLASATNLVS PITLQTKTPI DVPITNSKIQ IDTVFDIEAG 401: PIQDKDNCTG VADCFTNVEA EVVTEETCTV ESVFEIAGTK DKFSRLGSSF PDGDSLHSDE DSIVSVESDS GSELMELMTP SGQRLLRERP VKPSIKAKEI 501: QASSTTRGRG NRGRGNRGRG NRGRGNRGRG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)