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AT2G07340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.953
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PREFOLDIN 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PREFOLDIN 1 (PFD1); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin beta-like (InterPro:IPR002777), Prefoldin (InterPro:IPR009053); Has 311 Blast hits to 311 proteins in 149 species: Archae - 25; Bacteria - 0; Metazoa - 139; Fungi - 66; Plants - 52; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111W40eggNOG:KOG3501EMBL:AY048212EMBL:AY087310
EMBL:AY094019EMBL:CP002685EnsemblPlants:AT2G07340EnsemblPlants:AT2G07340.1
entrez:815304ExpressionAtlas:Q94AF7Gene3D:1.10.287.370GeneID:815304
GO:GO:0005829GO:GO:0006457GO:GO:0016272Gramene:AT2G07340.1
hmmpanther:PTHR20903HOGENOM:HOG000005946InterPro:IPR002777InterPro:IPR009053
ncoils:CoilOMA:EIQGRMIPfam:PF01920PhylomeDB:Q94AF7
Proteomes:UP000006548RefSeq:NP_850990.1SMR:Q94AF7STRING:3702.AT2G07340.1
SUPFAM:SSF46579TAIR:AT2G07340tair10-symbols:PFD1UniGene:At.13573
UniProt:Q94AF7
Coordinates (TAIR10) chr2:+:3045644..3046606
Molecular Weight (calculated) 14605.50 Da
IEP (calculated) 4.62
GRAVY (calculated) -0.68
Length 128 amino acids
Sequence (TAIR10)
(BLAST)
001: MADEATRAAF MEIQASMIEL TGKLKQVQNQ MRNKEGDRKR AFLTLEELRP LPEETNTYKS IGRTFVLEPK TVLEGEQEQK LKDSEAAVAS LQTSKEYLEK
101: QVAEVENNLR ELLQQEPGIA QQIMSMSM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)