AT2G07190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Domain of unknown function (DUF1985) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1985 (InterPro:IPR015410); BEST Arabidopsis thaliana protein match is: cysteine-type peptidases;cysteine-type peptidases (TAIR:AT2G07240.1); Has 165 Blast hits to 165 proteins in 27 species: Archae - 0; Bacteria - 6; Metazoa - 6; Fungi - 2; Plants - 127; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:2987367..2988945 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 51974.50 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.31 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.62 | ||||||||||||||||||||||||
| Length | 452 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGAAIMRNGK MIKDFWSRLL KRDGNICIRK LMTDIEDVKK WSEKKDIIRF VYICVIAGLV MATSETKKID HLYIKMVMDL HNVRNYPWGL KAYDNLLNCI 101: MKAIYALKKT KSYVLDGFSY TLQIWVMEAI PEIGSLLGEK ISTEFNEGPR CSNWKGAAKI SYEDIISVDR SFKSHAVFYP SISYFGNEVI NDREFVWRDE 201: IRDGEVDNMI EKIKSRKDFR DHVWESVVHN QIEGDNIENV QENDVQGKDD VTEDGNEVDH MSGVTEEGNE ENHVSGMNRS KKKQSDHGAE TRKKKLLCQR 301: ATATTHGALN DKMNSFLKAL IDSSFEKFEK RLQSKEDDTS LVEGLVSTSE TTRKTTRFTT SQPSNPTDQP SKLVQDLMSL DDDILDFNLG TQEFLDKSMG 401: HLSQLSQLSG FDSTQNLDKY IPDVDKNDKD AVLVFVSEAR WEAFREWDMK HE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)