AT2G05830.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.813 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NagB/RpiA/CoA transferase-like superfamily protein | ||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NagB/RpiA/CoA transferase-like superfamily protein; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: cellular biosynthetic process, translational initiation, cellular metabolic process; LOCATED IN: endomembrane system, eukaryotic translation initiation factor 2B complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase (InterPro:IPR005251), Initiation factor 2B related (InterPro:IPR000649), Initiation factor 2B alpha/beta/delta (InterPro:IPR011559); BEST Arabidopsis thaliana protein match is: NagB/RpiA/CoA transferase-like superfamily protein (TAIR:AT3G07300.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:2230057..2231839 | ||||||||||||||||
| Molecular Weight (calculated) | 34277.10 Da | ||||||||||||||||
| IEP (calculated) | 6.80 | ||||||||||||||||
| GRAVY (calculated) | 0.12 | ||||||||||||||||
| Length | 326 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVVRGAPAIA IAAALSLAVE VFNFHGFDGS ASDAVAFLEN KLDYLVSSRP TAVNLADAAL KLKHVIAKAL ATATEAKSIF KAYIEASEDM LEDDVVSNKA 101: IGNFGLSLLR QQAKNPDKLS VLTHCNTGSL ATAGYGTALG VIRALHTQGI LERAYCTETR PFNQGSRLTA FELVHEKIPA TLIADSAAAA LMKDGRVDGV 201: IVGADRVASN GDTANKIGTY SLALCAKHHG IPFYVAAPLT SVDLSLSSGK EIVIEERSPK ELMHTHGGLG ERIAAPGISV WNPAFDMTPA ELIAGIITEK 301: GVITKNGNDT FDISSFAKKI TGNSSR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)