AT2G05810.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G45720.2); Has 3013 Blast hits to 2075 proteins in 241 species: Archae - 0; Bacteria - 0; Metazoa - 567; Fungi - 298; Plants - 1810; Viruses - 0; Other Eukaryotes - 338 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:2215225..2216967 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62900.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.61 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.07 | ||||||||||||||||||||||||||||||||||||
| Length | 580 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MHPSSAAVSG ELTKPPTAPL QPLVDLITNV LSLLLLSSLT VRSFIGRWQI LRSKLFTLNS SLSSLSESPH WSQNPLLHTL LPSLLSNLQR LSSLSDQCSS 101: ASFSGGKLLM QSDLDIASSS LSTHISDLDL LLRSGVLHQQ NAIVLSLPPP TSDKDDIAFF IRDLFTRLQI GGAEFKKKSL ESLLQLLTDN EKSARIIAKE 201: GNVGYLVTLL DLHHHPLIRE HALAAVSLLT SSSADSRKTV FEQGGLGPLL RLLETGSSPF KTRAAIAIEA ITADPATAWA ISAYGGVTVL IEACRSGSKQ 301: VQEHIAGAIS NIAAVEEIRT TLAEEGAIPV LIQLLISGSS SVQEKTANFI SLISSSGEYY RDLIVRERGG LQILIHLVQE SSNPDTIEHC LLALSQISAM 401: ETVSRVLSSS TRFIIRLGEL IKHGNVILQQ ISTSLLSNLT ISDGNKRAVA DCLSSLIRLM ESPKPAGLQE AATEAAKSLL TVRSNRKELM RDEKSVIRLV 501: QMLDPRNERM NNKELPVMVV TAILSGGSYA ARTKLIGLGA DRYLQSLEEM EVPGAKKAVQ RLAAGNRLKS IFFTRPWKDH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)