AT2G05530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glycine-rich protein family | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Glycine-rich protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Glycine rich protein (InterPro:IPR010800); BEST Arabidopsis thaliana protein match is: glycine-rich protein 3 (TAIR:AT2G05520.5); Has 32113 Blast hits to 9490 proteins in 861 species: Archae - 8; Bacteria - 10040; Metazoa - 11064; Fungi - 1844; Plants - 5235; Viruses - 311; Other Eukaryotes - 3611 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:2029755..2030320 | ||||||||||||||||||||
| Molecular Weight (calculated) | 11387.10 Da | ||||||||||||||||||||
| IEP (calculated) | 7.83 | ||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||
| Length | 115 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASKALVLFG LFAVLLVVTE VAAASGTVKS ESGETVQPDQ YNGGHGGNGG YNGGGGYNGG GGHNGGGYNG GGGYNGGGHG GRHGYCRYGC CYRGYHGCSR 101: CCSYAGEAVQ TQPGH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)