AT2G05410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.968 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRAF-like family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT2G05420.1); Has 465 Blast hits to 417 proteins in 24 species: Archae - 2; Bacteria - 0; Metazoa - 6; Fungi - 2; Plants - 446; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:1977490..1978553 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30215.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.93 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||
| Length | 265 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAYPKGINKA HDSFSLFLNV PDNESLPTGW RRHAKVSFSL VNQGSEKLSQ RKVTQHWFVQ KAFTWGFPVM ITHTELNAKM GFLVNGELKV VAKIEVLEVV 101: GKLDVSKESS PIMKTIDVNG FQVLPSQVDS VKRLFEKNLD IVSKFRLKNP YLKTACMNLL LSLTETLCQS PQELSNDGLS DAGVALAYLI ETGLKLDWLE 201: KKLDELKEKK KKEESCLVRL REMDEQLQPF KKRCLDIEDQ ISKEKEELLA AREPLSLYDD IDNNV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)