AT2G05180.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.933 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : cytochrome P450, family 705, subfamily A, polypeptide 6 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of CYP705A | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cytochrome P450, family 705, subfamily A, polypeptide 6 (CYP705A6); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 705, subfamily A, polypeptide 3 (TAIR:AT4G15360.1); Has 29341 Blast hits to 29160 proteins in 1537 species: Archae - 45; Bacteria - 2709; Metazoa - 11073; Fungi - 5912; Plants - 8686; Viruses - 6; Other Eukaryotes - 910 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:1875390..1876794 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50251.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.66 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||
| Length | 442 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAILSVDFQ NCFIFIVLCL FSLFCYSLFF KKPKHPRGCD LPPSPPSLPI IGHLHLLFSP LTHKSLQKLS SKYGHLLHLR IFNVPVILVS SASVAYEIFR 101: AHDVNVSSRG VAAIDESLLF GSSGIITAPY GDYWKFMKKL IATKLLRPQS LESSRGIRGE ELTRFYNSLL DKARMTESVE ISTEAMKLVN NTLCRMSMGR 201: SFSEENGEAE KIRGLVGESY ALTKKMFLAS LLRKPLKKLR ISLFEKEIMG VSDRLDELLE RILVEHEEKL HEEHQGTDMM DVLLAASGDE NAEYNITRNH 301: IKSFFVEIFI GATDTSVQTT QWTMAEILNH PNVLERLRKD IDSVVGKTRL IHETDLPNLP YLQAVVKEGL RLHPPGPLLV RTFQERCKIK GFYIPEKTTL 401: VINAYAVMRD PDSWEDPDEF KPERFLRAPP MGGSLDKFIE FS |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)