AT2G05120.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nucleoporin, Nup133/Nup155-like | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Nucleoporin, Nup133/Nup155-like; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoporin, Nup133/Nup155-like, N-terminal (InterPro:IPR014908), Nucleoporin, Nup133/Nup155-like, C-terminal (InterPro:IPR007187); Has 161 Blast hits to 161 proteins in 58 species: Archae - 0; Bacteria - 2; Metazoa - 99; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:1842069..1846858 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 144606.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.25 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1285 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MFSPLTKRAK QSSRNEKTPR NRVPPPDSPV TPATQNRNNF ISDRPATGTP APWAPRLSVL ARVSPGNNGD KGVDSDQLKP VFVGEFPQLL RDEQSYPGDA 0101: CVSGGMDKET CLSWFITGSK VFVWSHLTTL PSRKCVVLEL PVVVLVNEES GSGLQDGKSW LVNVVSWDTS AGAATRASRS RSPVGVVMCN RKTRAVVYWS 0201: DIFSGQEAAP AEKARHLIKR QSNGIRSSRA ENSDLNSLIT TAVAAAERLC IAIACSSNGE LWQFTCSPTG VKSNQVQLNI SSSSVSEGYP RSLIWRFSQG 0301: LARESCWEFL MLTDCDIHCF TIEPYPDLTV SEVWQHEIVG TDGDSGIKKD IASQKQIWPL DLQVDDQGKV ITVLVATICM DRASSSSYTQ YSLLTLQHKS 0401: EMRFADGREE KVLEKQGPIQ VIIPKARVED KDFLFSMRLR VGGRPPGSAI ILSGDGTATV CYCHGSSTRL YKFDLPYDAG KVLDASVLSS TDEHEYGAWT 0501: VLTEKAGVWA IPEKAVVLGG VEPPERSLSR KNSSNERSTR DETRVTPYGV DRTAGRENSD IQNIEDKGNP KMGFTRQTAR DEESEALLGQ LFEGFLLSGK 0601: VDGSLEKLSQ SGAFDRDGEA NVFARKSKSI VDTLAKHWTT TRGAEIVAMT VISSQLVEKQ QKHENFLHFL ALSKCHEELC SKQRHSLQII LENGEKLAAM 0701: IQLRELQNMI NQNRSARFGS PQAGSEDQVS CALWDLIQFV GERARRNTVL LMDRDNAEVF YSKVSELEEV FYCLNRQLEY IIRADQPLGT QLQRACELSN 0801: ACVTILQTAL DYKNEHQMWY PPLEGLIPWH SQTVVCNGLW CIASFMLHLL TEASRIDISA KSDIYTHLEV LTEVLLEACA GSTFAKLERE EENKGLLNEY 0901: WTRRDTIFDS LYRQAKEFME AEIQGIRERT EATDEDIFRN RCSNLISIAK RHAGYKIMWK ICYDLNDTGL LRNLMHEGVG PQGGFSYFVF QQLYDMKQFS 1001: KLLRLGEEFQ DELLIFLKRH SDLVWLHQVF LHQFSSASDT LHTLALSQDE ESMTTVEERT GPEPEDVQPT FADRKRFLNL SKIAYVADKD ADSESKVKRI 1101: EADLNLLKLQ EEITKALPNG EARNRLFRPE ELIETCLNIQ GRWTAIKAFE VFAWTSSSFR ENHRSLLEEC WRNAADQDDW DRHHQASTNE GWSEEETLQN 1201: LRNTALFQAS KRCYGPTRVN TFDGDFAQVL PLRRENPEDS TSSVEDVLMS HKDFAEAGKL MLTAIMLGCV EEEGIVAEEF SSPME |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)