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AT2G04910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.989
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Carbohydrate-binding X8 domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Carbohydrate-binding X8 domain superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: Carbohydrate-binding X8 domain superfamily protein (TAIR:AT5G35740.1); Has 1236 Blast hits to 1188 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1236; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-189-MONOMERCAZy:CBM43EMBL:AC006955EMBL:AC007211
EMBL:CP002685EnsemblPlants:AT2G04910EnsemblPlants:AT2G04910.1entrez:815038
GeneID:815038Gramene:AT2G04910.1hmmpanther:PTHR32227hmmpanther:PTHR32227:SF60
HOGENOM:HOG000242131InterPro:IPR012946OMA:TEVDPSHPfam:PF07983
PhylomeDB:Q9SI35PIR:A84463Proteomes:UP000006548RefSeq:NP_178568.1
SMART:SM00768SMR:Q9SI35TAIR:AT2G04910UniGene:At.66162
UniProt:Q9SI35
Coordinates (TAIR10) chr2:-:1723980..1724354
Molecular Weight (calculated) 13857.30 Da
IEP (calculated) 4.52
GRAVY (calculated) -0.17
Length 124 amino acids
Sequence (TAIR10)
(BLAST)
001: MGYLIFVAKA EFGQWCVADG QIPDNVIQAA VDWACQTGGA DCSTIQPNQP CFLPNTVKDH ASVVFNNYYQ RYKRNGGSCN FNSTAFITQT DPSKQLYLNP
101: FCYSYLSSLI NQNLEPSVSD YLMI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)