AT2G04880.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc-dependent activator protein-1 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes WRKY1, a member of the WRKY transcription factors in plants involved in disease resistance, abiotic stress, senescence as well as in some developmental processes. WRKY1 is involved in the salicylic acid signaling pathway. The crystal structure of the WRKY1 C-terminal domain revealed a zinc-binding site and identified the DNA-binding residues of WRKY1. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
zinc-dependent activator protein-1 (ZAP1); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY family transcription factor family protein (TAIR:AT4G26640.2); Has 5746 Blast hits to 3098 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 2; Plants - 5699; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:1718557..1720219 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51212.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.02 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.94 | ||||||||||||||||||||||||||||||||||||
| Length | 463 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEVGKVLAS DMELDHSNET KAVDDVVATT DKAEVIPVAV TRTETVVESL ESTDCKELEK LVPHTVASQS EVDVASPVSE KAPKVSESSG ALSLQSGSEG 101: NSPFIREKVM EDGYNWRKYG QKLVKGNEFV RSYYRCTHPN CKAKKQLERS AGGQVVDTVY FGEHDHPKPL AGAVPINQDK RSDVFTAVSK EKTSGSSVQT 201: LRQTEPPKIH GGLHVSVIPP ADDVKTDISQ SSRITGDNTH KDYNSPTAKR RKKGGNIELS PVERSTNDSR IVVHTQTLFD IVNDGYRWRK YGQKSVKGSP 301: YPRSYYRCSS PGCPVKKHVE RSSHDTKLLI TTYEGKHDHD MPPGRVVTHN NMLDSEVDDK EGDANKTPQS STLQSITKDQ HVEDHLRKKT KTNGFEKSLD 401: QGPVLDEKLK EEIKERSDAN KDHAANHAKP EAKSDDKTTV CQEKAVGTLE SEEQKPKTEP AQS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)