AT2G04500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.596 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, ZZ-type (InterPro:IPR000433), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT4G14980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:1568492..1569979 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57028.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.12 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||
| Length | 495 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRRDLRALPC SHFPKIFING NHDCHFCKID LSTTSLYARC TICNVNMDLD CMVNLPPLTI FEPKHHKHSF NLLLRVVTFT CNACGLEGDR NPYVCYECHL 101: MVHKDCIEGL PGVIYINRHD HRVSHTFHLG QEERDWECGV CRRTIDWVYG AYTCSLCPSY AVHSKCATRK EVWDGRELED VSEEDEEIED PFKVINETDI 201: IHFSHEEHVL RLDENCHMEN DATRCRGCIL AINGNLSYKC LECDFIIHKV CASLPRKRRH FLHNHKLTLR VDKASIFLCS TCDTTPNGFR YECDEDHGDE 301: EFVFDLQCSS ISEPFLHDLH PHPLYWTLEH SKKCKACGTK AGYDLNCIVC DDYSLCMTCA TLPSKVKHRC DDHLLSLRQG ASDFDTGHLW CDICETKTDP 401: SVFYYTCDDC GVSLHLKCVL GDLYNAKLGL IDPRDPAHEV LPNNGVTRPF CFHCELRCKF PFLIRRATEE FTLYYCSLNC CLEAAFYIPP VTDEG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)