AT2G04090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.691 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MATE efflux family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G04100.1); Has 9714 Blast hits to 9643 proteins in 1968 species: Archae - 172; Bacteria - 6792; Metazoa - 143; Fungi - 326; Plants - 1316; Viruses - 0; Other Eukaryotes - 965 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:1362653..1364690 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51309.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.36 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.71 | ||||||||||||||||||||||||||||||||||||||||
| Length | 477 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDPLLLGDD QLITRNLKST PTWWMNFTAE LKNVSSMAAP MATVTVSQYL LPVISVMVAG HCGELQLSGV TLATAFANVS GFGIMYGLVG ALETLCGQAY 101: GAKQYTKIGT YTFSAIVSNV PIVVLISILW FYMDKLFVSL GQDPDISKVA GSYAVCLIPA LLAQAVQQPL TRFLQTQGLV LPLLYCAITT LLFHIPVCLI 201: LVYAFGLGSN GAALAIGLSY WFNVLILALY VRFSSACEKT RGFVSDDFVL SVKQFFQYGI PSAAMTTIEW SLFELLILSS GLLPNPKLET SVLSICLTTS 301: SLHCVIPMGI GAAGSTRISN ELGAGNPEVA RLAVFAGIFL WFLEATICST LLFTCKNIFG YAFSNSKEVV DYVTELSSLL CLSFMVDGFS SVLDGVARGS 401: GWQNIGAWAN VVAYYLLGAP VGFFLGFWGH MNGKGLWIGV IVGSTAQGII LAIVTACLSW EEQAAKARER IVGRTLE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)