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AT2G03250.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.547
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : EXS (ERD1/XPR1/SYG1) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EXS (ERD1/XPR1/SYG1) family protein; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: EXS, C-terminal (InterPro:IPR004342), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: EXS (ERD1/XPR1/SYG1) family protein (TAIR:AT1G14040.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5409eggNOG:KOG1162EMBL:AC005313EMBL:AY507958
EMBL:CP002685EnsemblPlants:AT2G03250EnsemblPlants:AT2G03250.1entrez:814854
GeneID:814854GO:GO:0005886GO:GO:0006817GO:GO:0016021
Gramene:AT2G03250.1hmmpanther:PTHR10783hmmpanther:PTHR10783:SF43HOGENOM:HOG000241861
InParanoid:Q6R8G4InterPro:IPR004331InterPro:IPR004342KEGG:ath:AT2G03250
OMA:LGMAYEVPaxDb:Q6R8G4Pfam:PF03105Pfam:PF03124
Pfam:Q6R8G4Pfscan:PS51380Pfscan:PS51382PhylomeDB:Q6R8G4
PIR:T02701PRIDE:Q6R8G4PRO:PR:Q6R8G4PROSITE:PS51380
PROSITE:PS51382Proteomes:UP000006548RefSeq:NP_178424.2STRING:3702.AT2G03250.1
TAIR:AT2G03250TMHMM:TMhelixUniGene:At.49325UniProt:Q6R8G4
Coordinates (TAIR10) chr2:-:982173..986662
Molecular Weight (calculated) 87856.70 Da
IEP (calculated) 9.03
GRAVY (calculated) -0.08
Length 756 amino acids
Sequence (TAIR10)
(BLAST)
001: MKFGKDFSSE WQQAYVDYKY LKTLVKDINR FKRKTNLHGG QISLSSTVLE IEDGITTATI QVSSTASQRY ETTFLMTAEK GGEYELVFFR RLDDEFNKVE
101: KFYREKVDEV VKEAAVLNKQ MDALIAFRLK MKEESTVEMA RFALHGVVSP AELAKNPSMK VHMEAIEEGG SSRAGRRSDE DDYYTDEEDH NDVFFTPANN
201: LSKMKSSSSA FIEVLDSIKI NNTKEALQSN TKSVLKVSNH TELKFSRDNL RKIEEKLICA FVEFHRKLWY LKSYSFLNVL ALSKILTKYD KITSRDAAKS
301: YMKMVDKSCL GSSDEVMKLM ENVEATFIKQ FTNGNRTKGM NILRPKPKRE RHRLTFSTGF LGGCMFSLIV ALVAIVRTRN ILQDDGQKQY MNTMFPLYSL
401: FGFIMLHMTM YAANIYFWRQ YRVNYSFIFG FKQGTELGYK QVLFVGFSIG ALALLCVLAN LDMETDPKTK DYQALTELLP LFLLIAMFVV LVVPFNIFYR
501: SSRFFFLTTL FHMLAAPLYK VTLPDFFLAD QLCSQAQTLR SIEFYICYYG WGDFKQRKNT CKDSQVFNTF LFIVSAFPFF SRFLQCMRRM LEEKNIEQGY
601: NGFKYIVIVV AVCLGMAYEV DDEKDRQIIW RLLGGITSAM AVVFCTYWDL VYDWGLLNRT SKNPWLRDNL LIPHKEVYVL AMILNVVLRF AWMQTVLDFK
701: FESIHTQTVV AVVASLEIIR RGIWNFFRLE NEHLNNVGKY RAFKAVSLPF NYEVDH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)