AT2G03150.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : ATP/GTP-binding protein family | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
embryo defective 1579 (emb1579); FUNCTIONS IN: binding, calcium ion binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:952313..959004 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 150921.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.51 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.13 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1340 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MHRDMYSSRG TGYGQQQYGS QSGYSQNLGS GYPGSSVSGG AEGGSQISLS SRHPSITGAP QETDIGGGYR SHLSTAASHY GTQYGSVYGS TSLSSSQPLS 0101: TNGLGSSVLD NRSGYVPTLP DSPKFASGSY LSPSSHGYGQ KTDDLYSDKL SGYIPVDRRQ YGEQSSSYLG RELQNEPTRR YADPSNFARQ TDLYDRIDQA 0201: SLLRGEQLLK MQSLHTSSVD AGVNRQTDYL TERSSTVRHS DQEAMHYGGR LESDPHGLSV RNTSSYASQH TPSLLGAVPR RNLDDYIYPE SSSNPGYGVS 0301: LPPGRDYGTG KGIHSAASLD LDYPGGMLAR GTGAAPRVDD LRKGDRASYL REFDLREEER RREDQRARDK EREREREREH DRERERQRER ERQRARDRER 0401: ERILERREKE RQGERERERK RALEIKRDRT PTARATSKDT KERTPVPKSI SRDARSSSLR RDAHHREASI RRSSPIKPIR RDYVCKVLSS RLVDMERDYV 0501: TLDKRYPRLF VPSEFSKVVV NWPKQKLTLS MHTAVSFEHD YIEDGGADVK STSTKPLALK TGGKSVWNAK MVLMSGLSRT ALEDLASDKF FEDRIPHICN 0601: ILKFAVLKKD HSFMAIGGSW DPTDGMDPSV DQSSLIQTML RHSKDKLHLD LSNCRHWNPF LEIHYDRVGT DGVFSYKEIT VLFVPDLSEC LPSFDVWRTQ 0701: WLAHRKALTE RDRLLSQEVK KDTVEVTKDA EKKSPGDTSG TPTTGTKKTV KKIIKRVVKR PVNDGKATGM KGEKSDVPEH VAIPETTVPK EESTGTSSNK 0801: KIVKKVAETG DTSDPSAKAN EQTPAKTIVK KKIIKRVAKR KVAEIDNKMD GDSKKDGDSD EKKVMEVGKK SSDSGSVEMK PTAESLEDVK DENASKTVDV 0901: KQETGSPDTK KKEGASSSSK KDTKTGEDKK AEKKNNSETM SEGKKIDRNN TDEKEVKEKV TEKEIKERGG KDESRIQVKD RKKCEEPPRA GFILQTKRNK 1001: DSKLRSLSAS LDSLLDYTDK DLDESSFEIS LFAESLYEML QYQMGSRIFE FLKKLRVKIV RQRNQRKRHQ EELSVKQNEA KSQDKRQKTA EHEDKEASVI 1101: SESAPGKDDK ETSGKETVDG SREIADKEAV AKTKETLGSK EVTVGEAVNM EVENQDEEDD DGDDDPEEDP EEDPEEDPEE DPEEDPEECE EMDVANTEQE 1201: EPAEEPQKKE ENLEKTSGTV ADPITEAETD NRKEERGPND SKTEIKPKSE TEKHGKQDGG TSDAAKREET VDKELLQAFR FFDRNQAGYV RVEDMRVTIH 1301: SLGKFLSHRE VKELVQSALL ESNTGRDDRI LYNKLVRLSL |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)