AT2G03000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/U-box superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G14200.1); Has 30893 Blast hits to 17053 proteins in 804 species: Archae - 45; Bacteria - 3195; Metazoa - 9909; Fungi - 5711; Plants - 4804; Viruses - 543; Other Eukaryotes - 6686 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:875233..877207 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59367.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.27 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||
| Length | 535 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSDMRDERF FYHRYLSVTN RTTPTTATNL PTSTSNMRST SLMTPRVAHT SMSSGGDFPD DRFFHARHQS ATDRAASNRS RAIMPISTTN VPSSTSNSPR 101: VLQTSMSRRG TSPMSSSTRR SVQASMSARE TVPSSTSTRS MQTSTSTPEI MPTSSRNVIT SSEEVANTFT QTSYIQFGSL WETNTTPSTR SWPTVPSSNS 201: PRVLQTSMSR RGTSPMSSST RRNVQSSMSG RETVSSSTST SSMQTSMSTP EIMPTSSRNV ITRSEEVANT FSTQTPYIQF GRLWETNTTS STRSRTTVPT 301: STTNVPSSNS SRVLQTSMST RGTFPMSSST RMSVQASMLA PGTVSSSMST VEIMPTSARN MITMSEEVAN SFTQTSYIQF GSLWETFKTV TKLSRVAMVE 401: NGECVICLEE WRKETYVTSS TSNMRTSSLM TLTRFIDEQI SLRATVSSTR TTARLLTNES PATIRAVAML PRVAMVEKGE CVICFEEWSK SDMETELPCK 501: HKYHLECVEK WLKIHTSCPQ CRYKLSCVYK SFLML |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)