AT2G02890.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.575 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : F-box family protein | ||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
F-box family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT2G02660.1); Has 1072 Blast hits to 1023 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1072; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:843913..846616 | ||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 60431.40 Da | ||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.51 | ||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||
Length | 531 amino acids | ||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MLCTGSNAST IIQEQKHQQD SASADHRSTL LGLETELKKD SRSLLFSCCC LALAWAAALP RASAAARSAL TLASAFTLSL ASTAAFSVFS LASAYAPALL 101: CFCETFGSLK GYEVENHMNA SVTMLEEAIM YSSFSSKKRI RHSSSLTNDL IEEILSRLHS KSVARFRCVS KQCASMFASP YFKKLFQTRS SAKPSLLFAI 201: ADYGIEEDYS MKFFSSPQLE NTYEKTSSTL VAAAEFHVKF SPDKSIPIYL SEDPRYVSIG YASGLIYNYC GRYVGRPLIC NPNTGRYAIL PYRYTYRKAY 301: SFFGFDPIDK QYKALSLPYV DGPGRSKVLT FGAGDLTWRN IKSHTEDISY RYYEYVIVCF DVTSEKFTFV GVQKFCLLIN YKGKLDVIYW EDDVDIHEIC 401: YFAKDLDEYL DENLDADATN ELHVWVLEDV EKQEWSKYAY TWTDDTFFHR HLSIAGATAS GEIVFSMRKY TSKQPFYVFY FNPERNTLQR VEIQGFGEAF 501: RTTCSVRTFV NHIEDLDVND LEQLNYIGTR R |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)