AT2G02650.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.966 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ribonuclease H-like superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT3G09510.1); Has 1375 Blast hits to 1363 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 1371; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:735411..736546 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42166.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.91 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||
| Length | 365 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRKRILRSGY WVATHEDLLE EEAIQPPPGS TEVKQAIWKL HVAPKIKHFL WRCVTGALAT NTRLRSRNID ADPICQRCCI EEETIHHIMF NCPYTQSVWR 101: SANIIIGNQW GPPSSFEDNL NRLIQLSKTQ TTNSLDRFLP FWIMWRLWKS RNVFLFQQKC QSPDYEARKG IQDATEWLNA NETTENTNVH VATNPIQTSR 201: RDSSQWNPPP EGWVKCNFDS GYTQGSPYTR SGWTIRECNG HIVLCGNAKL QSSTCSLHAE ALGFLHALQV IWAHGLRYVW FESDSKSLVT LINNGEDHSL 301: LGTLIYDIRH WMLKLPYCSL EFVNRERNSA ADALASHVHA RDPLFQSYTT PPSWLVNTLY YPYTI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)