AT2G02020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.971 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 2 (TAIR:AT2G02040.1); Has 8051 Blast hits to 7680 proteins in 1472 species: Archae - 0; Bacteria - 4049; Metazoa - 790; Fungi - 469; Plants - 2161; Viruses - 0; Other Eukaryotes - 582 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:479117..481131 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60883.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.48 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.37 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 545 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASIDEERSL LEVEESLIQE EVKLYAEDGS IDIHGNPPLK QTTGNWKACP FIFANECCER LAYYGIAKNL ITYFTNELHE TNVSAARHVM TWQGTCYITP 101: LIGALIADAY WGRYWTIACF SAIYFTGMVA LTLSASVPGL KPAECIGSLC PPATMVQSTV LFSGLYLIAL GTGGIKPCVS SFGADQFDKT DPSERVRKAS 201: FFNWFYFTIN IGAFVSSTVL VWIQENYGWE LGFLIPTVFM GLATMSFFFG TPLYRFQKPR GSPITSVCQV LVAAYRKSNL KVPEDSTDEG DANTNPWKLC 301: TVTQVEEVKI LLRLVPIWAS GIIFSVLHSQ IYTLFVQQGR CMKRTIGLFE IPPATLGMFD TASVLISVPI YDRVIVPLVR RFTGLAKGFT ELQRMGIGLF 401: VSVLSLTFAA IVETVRLQLA RDLDLVESGD IVPLNIFWQI PQYFLMGTAG VFFFVGRIEF FYEQSPDSMR SLCSAWALLT TTLGNYLSSL IITLVAYLSG 501: KDCWIPSDNI NNGHLDYFFW LLVSLGSVNI PVFVFFSVKY THMKV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)