AT2G01810.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/FYVE/PHD zinc finger superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G66170.1); Has 637 Blast hits to 622 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 216; Plants - 250; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:347537..349952 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79484.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.30 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 697 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAITAYDALT ERQKAPKVLL INDFAISSSS SSPPFFNLAA TFRDNIRSFL REYAEIEDYT IDGATVSTIF LGSQANGVVF PLYIIEQQIS DSSPNPLCDF 101: CRCFGWGHHY VTKRKYHMII PNRDEWNEPL KRESLTLSSH LMHGLIHCNG FGHLLCINTD LDDPNHLSGD QIMDFWDRLC STLHTRKISL DDTSKKGAMD 201: LRLLHGVAYG RPWFGKWDYM FSHGSFGVKK DLYWRAILTL SSIEVDKILE ELSGTSKGRV MKKIIDFYRG STESPLATLS DLLRFMLGFI SKAPIERKTA 301: MALVAMSLDH VSYPTLRADE NSEVCTSPDQ ESDDNGYESG RDTVLDDHNT TTSGIKPPQY YSFDDLSRRE HSRWPGRRLN DAAQAVLKVF KERNSTISRQ 401: DLREAVRSSI GDTGLIDFLL KHIDKVLIGD QIVQRSTNPK SRMLQFSLRT INSRVQEQKR KKKRKVKPQE TSECTSTTPG LSPYDDILYL YQNLLLTYPD 501: SDLYSEASQV ILKCKSFVKE WSYQEQNHLT VSCQVLPNHE ELLRDFTRLL PPGDLVAVPE NATIRELKSA AEKVLRDTYC ITETFEVLEI RNRYLEKLDD 601: NVSLKSQGNT EFMVKGFGLD IGTELRYEGG FDDWTVDCKC GARDDDGERM VACDACKVWH HTLCNSIEDD EAVPSVFLCN MCYGDSLRSK KRNLSIR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)