AT2G01800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : COP1-interacting protein-related | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
COP1-interacting protein-related; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT4G00580.1); Has 777 Blast hits to 692 proteins in 155 species: Archae - 4; Bacteria - 61; Metazoa - 249; Fungi - 76; Plants - 111; Viruses - 5; Other Eukaryotes - 271 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:343766..345254 | ||||||||||||||||||||
| Molecular Weight (calculated) | 33537.20 Da | ||||||||||||||||||||
| IEP (calculated) | 4.58 | ||||||||||||||||||||
| GRAVY (calculated) | -0.82 | ||||||||||||||||||||
| Length | 304 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSGRNESQCV FVKTSIDTRL ALLLDSDDSV YAFKEKICKE HEQCFPSVGN ITISALKVNL GGNDYHLSDC TILKTALQGL RNKDWFLSVD LVRVEEKGEL 101: QIGEVVEKKA RKRKSKSDNK SIKKPSIETP TEAKGLESGE GNVTKMGENQ HICDADQEGP VNGHTIDVEV KLDPVDGHTI DVEAKLDLSG TMEQDDLQKE 201: VTNADLVMSD QDKDLEKDNL LAELHQTTDD AEKEEIIGLV NATPEAIENE TEMSAKEKDG DEEAKSEKPK KKKRAKKVKT PTKEDGLVAS SSRNAEEDGV 301: ARDP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)