AT2G01790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.788 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRAF-like family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TRAF-like family protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: Meprin and TRAF (MATH) homology domain-containing protein (TAIR:AT3G27040.1); Has 829 Blast hits to 759 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 6; Plants - 580; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:341322..342480 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30516.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.84 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||
| Length | 269 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGNHQAVKKL WVINNFSFLD SDRVYSDIFV VGGCKWCLLA LPEGNNNYIY DYFSLYLCVP DSEYLPSGWR RRAKVSFTMV NQVTGELSQQ QEGVYWFDEK 101: NTTQGFGSMF RLLVFQSSYK GFLVNGEVDI VAEVDVVEVI GKLDVSEESE SIDSNGFDVL ASQVESVNSL FGKYPCFASK LCPKTPRLKK NVVQSLNEIL 201: CKSTKELSNG DLAEAYSALR FVTKAGFKLD WLEKKLKETG KSRLQEIEED LKDLKVKCAD MDALLEFLR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)