AT2G01320.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.518 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ABC-2 type transporter family protein | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT3G25620.2); Has 387349 Blast hits to 354243 proteins in 4108 species: Archae - 7085; Bacteria - 307989; Metazoa - 8597; Fungi - 6708; Plants - 5387; Viruses - 19; Other Eukaryotes - 51564 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:154487..158063 | ||||||||||||
| Molecular Weight (calculated) | 79176.00 Da | ||||||||||||
| IEP (calculated) | 5.87 | ||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||
| Length | 728 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAPFGGKSLA DVVSGIGGNG VGGALAAVAA ALLVRLFAGP GIALLPEDEA EDDYAETEDG GGDSIRPVTI RWRNITCSLS DKSSKSVRFL LKNVSGEAKP 101: GRLLAIMGPS GSGKTTLLNV LAGQLSLSPR LHLSGLLEVN GKPSSSKAYK LAFVRQEDLF FSQLTVRETL SFAAELQLPE ISSAEERDEY VNNLLLKLGL 201: VSCADSCVGD AKVRGISGGE KKRLSLACEL IASPSVIFAD EPTTGLDAFQ AEKVMETLQK LAQDGHTVIC SIHQPRGSVY AKFDDIVLLT EGTLVYAGPA 301: GKEPLTYFGN FGFLCPEHVN PAEFLADLIS VDYSSSETVY SSQKRVHALV DAFSQRSSSV LYATPLSMKE ETKNGMRPRR KAIVERTDGW WRQFFLLLKR 401: AWMQASRDGP TNKVRARMSV ASAVIFGSVF WRMGKSQTSI QDRMGLLQVA AINTAMAALT KTVGVFPKER AIVDRERSKG SYSLGPYLLS KTIAEIPIGA 501: AFPLMFGAVL YPMARLNPTL SRFGKFCGIV TVESFAASAM GLTVGAMVPS TEAAMAVGPS LMTVFIVFGG YYVNADNTPI IFRWIPRASL IRWAFQGLCI 601: NEFSGLKFDH QNTFDVQTGE QALERLSFGG RRIRETIAAQ SRILMFWYSA TYLLLEKNKP KYQKLELLVD NGETGNSGVQ LDKAEVDQTE KPEDDDINQP 701: LDDQNQTSDS DDELDEIRPF VLEAGSKV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)