AT2G01050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.975 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc ion binding;nucleic acid binding | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc ion binding;nucleic acid binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G31430.1); Has 369 Blast hits to 365 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 367; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:68337..69884 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56346.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.34 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||
| Length | 515 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLDVGEKGRP PGDPPDKLES WATKVKGSAG GGILKPEDVI DDEFVRERVG LEFPDGEDEE PVITIGEEVL EAMNGLWKKC MIVKVLGSQI PISVLNRKLR 101: ELWKPSGVMT VMDLPRQFFM IRFELEEEYM AALTGGPWRV LGNYLLVQDW SSRFDPLRDD IVTTPVWVRL SNIPYNYYHR CLLMEIARGL GRPLKVDMNT 201: INFDKGRFAR VCIEVNLAKP LKGTVLINGD RYFVAYEGLS KICSSCGIYG HLVHSCPRNV VVKVSAGAET VTDRAVVPVG MEGDDGFTVV QRTARRPAAP 301: VQKMVFAVGA SGGRSKQRLR ELPKNQGVDL ANRFGGLDGN GDLPDLREVA ITEGPNKENE YHGRNVGKVM GVPLVKEARG STQMEKGKGG SKGGFKWKRN 401: GGMKALEPIG PKQKHGAANK PARGLIFGPT KDANSVPVGE DLLSNGKRLR VEQRDVGRPG GVYSSAMGSH AHEASFDLDS SSTLSQRFQR EDLMSEIAVV 501: SHEGSEVGNS SEGMA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)