AT1G80320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.748 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G15540.1); Has 5609 Blast hits to 5543 proteins in 727 species: Archae - 0; Bacteria - 610; Metazoa - 47; Fungi - 436; Plants - 3975; Viruses - 0; Other Eukaryotes - 541 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:30196782..30197896 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36944.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.45 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||||||
| Length | 320 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSHEEQCLP ILDFSSDKLV RGTSHWITTR DDVRRAMEGQ GWFVAEFSGV SSDLRDNLLA GMKEMYYLPD QIKIKNENHK ASHGYMSMVV DDYRIHESLG 101: IDYATELQAC KDFSKLLWPQ GNDPFCQTTH MYAMTMAELD QTVMRMLYES YGMDEKKHSV SHSESTRYLL RMLSYRRQQN GEANTGFVSH TDKSFMSILH 201: QNHVGGLQLK TMTGQWVGFN PSPTRFVVLS GMGLTAWSND RIKACYHKVV MSADEIRYSL GFFSFHKGTI RTPEELVDDQ HPLRYNPFEH DGLLRFYESY 301: INSLKKSSED LLQIYCGVTP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)