AT1G79940.4
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.886 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DnaJ / Sec63 Brl domains-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
J domain protein localized in ER membrane. Mutants have defective pollen germination. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ATERDJ2A; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion, integral to endoplasmic reticulum membrane, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DnaJ / Sec63 Brl domains-containing protein (TAIR:AT4G21180.1). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:30070023..30073237 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66491.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.62 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 594 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAASEENSAL FPIFILTIMA IPLVPYTMVK LSGALSKKQR TIHCQCLECD RSGKYKRSLF KKISNFSTWS NLTLVLLWVV MIFLIYYTKN MSREAQVFDP 101: FSILGLEPGV TDSEIKKAYR RLSIQYHPDK NPDPEANKYF VEFISKAYQA LTDSVSRENF EKYGHPDGRQ GFQMGIALPQ FLLDIDGASG GILLLWIVGV 201: CILLPLVIAV IYLSRSSKYT GNYVMHQTLS AYYYLMKPSL APSKVMEVFT KAAEYMEIPV RRTDDEPLQK LFMSVRSELN LDLKNMKQEQ AKFWKQHPAI 301: VKTELLIQAQ LTRESGVLSP ALQGDFRRVL ELAPRLLEEL LKMAVIPRTA QGHGWLRPAV GVVELSQCIV QAVPLSARKS SGVSSEGISP FLQLPHFSDA 401: VVKKIARKKV KSFQDLQEMR LEDRSELLTQ VAGLSATDVE DIEKVLEMMP SITVDITCET EGEEGIQEGD IVTLQAWVTL KRPNGLVGAL PHAPYFPFHK 501: EENYWVLLAD SVSNNVWFSQ KVSFLDEGGA ITAASKAISE SMEGSGAGVK ETNDAVREAI EKKDMDEKRG SKKANGSVKQ KKESSSEESG SEEE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)