AT1G79840.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
GLABRA 2 (GL2); CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:30037093..30041013 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86541.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.82 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 776 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKSIDGCQCC SWPCFKLLNS KKLARDRICM SMAVDMSSKQ PTKDFFSSPA LSLSLAGIFR NASSGSTNPE EDFLGRRVVD DEDRTVEMSS ENSGPTRSRS 101: EEDLEGEDHD DEEEEEEDGA AGNKGTNKRK RKKYHRHTTD QIRHMEALFK ETPHPDEKQR QQLSKQLGLA PRQVKFWFQN RRTQIKAIQE RHENSLLKAE 201: LEKLREENKA MRESFSKANS SCPNCGGGPD DLHLENSKLK AELDKLRAAL GRTPYPLQAS CSDDQEHRLG SLDFYTGVFA LEKSRIAEIS NRATLELQKM 301: ATSGEPMWLR SVETGREILN YDEYLKEFPQ AQASSFPGRK TIEASRDAGI VFMDAHKLAQ SFMDVGQWKE TFACLISKAA TVDVIRQGEG PSRIDGAIQL 401: MFGEMQLLTP VVPTREVYFV RSCRQLSPEK WAIVDVSVSV EDSNTEKEAS LLKCRKLPSG CIIEDTSNGH SKVTWVEHLD VSASTVQPLF RSLVNTGLAF 501: GARHWVATLQ LHCERLVFFM ATNVPTKDSL GVTTLAGRKS VLKMAQRMTQ SFYRAIAASS YHQWTKITTK TGQDMRVSSR KNLHDPGEPT GVIVCASSSL 601: WLPVSPALLF DFFRDEARRH EWDALSNGAH VQSIANLSKG QDRGNSVAIQ TVKSREKSIW VLQDSSTNSY ESVVVYAPVD INTTQLVLAG HDPSNIQILP 701: SGFSIIPDGV ESRPLVITST QDDRNSQGGS LLTLALQTLI NPSPAAKLNM ESVESVTNLV SVTLHNIKRS LQIEDC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)