AT1G79630.3
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.713 What is SUBAcon? |
|
||||||||
| Experimental Localisations and PPI |
|
||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||
| Description (TAIR10) | protein_coding : Protein phosphatase 2C family protein | ||||||||
| Curator Summary (TAIR10) |
|||||||||
| Computational Description (TAIR10) |
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G16220.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||
| Protein Annotations |
|
||||||||
| Coordinates (TAIR10) | chr1:-:29962931..29964920 | ||||||||
| Molecular Weight (calculated) | 46850.50 Da | ||||||||
| IEP (calculated) | 4.37 | ||||||||
| GRAVY (calculated) | -0.30 | ||||||||
| Length | 421 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MLVFENFCSR DDTVFCGVFD GHGPFGHMVA KKVRDTLPFT LLTQLKMTSE SDQSSLVGAN GFQIKCTEEE EVQTTESEQV QKTESVTTMD EQWCELNPNV 101: NNDELPEMYL PLKHAMLKSC QQIDKELKMH PTIDCFCSGT TSVTLIKQGE DLVVGNIGDS RAVLATRDED NALLAVQLTI DLKPDLPGES ARIQKCKGRV 201: FALQDEPEVA RVWLPNSDSP GLAMARAFGD FCLKDYGLIS VPDINYRRLT ERDQFIILAS DGVWDVLSNK EAVDIVASAP SRSTAARALV DTAVRSWRIK 301: YPTSKNDDCT VVCLFLQDSS VAMEVSTNVK KDSPKEESIE SVTNSTSKEE DEIVPVKDEK IPESCGIESK MMTMTLAECI SVAQDDEEWS ALEGLTRVNS 401: LLSIPRFLSG ELRSTSWRKW L |
||||||||
| See Also |
|
||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)