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AT1G79550.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:30135097 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi
  • PMID:25805245 (2015): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:24012629 (2013): nucleus
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22574745 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
  • PMID:20843791 (2010): plasma membrane
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:14617066 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phosphoglycerate kinase
Curator
Summary (TAIR10)
Encodes cytosolic phosphoglycerate kinase (PGK).
Computational
Description (TAIR10)
phosphoglycerate kinase (PGK); FUNCTIONS IN: phosphoglycerate kinase activity; INVOLVED IN: glycolysis; LOCATED IN: cytosol, apoplast, plasma membrane, nucleus, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate kinase, N-terminal (InterPro:IPR015824), Phosphoglycerate kinase (InterPro:IPR001576), Phosphoglycerate kinase, C-terminal (InterPro:IPR015901); BEST Arabidopsis thaliana protein match is: Phosphoglycerate kinase family protein (TAIR:AT1G56190.1); Has 10844 Blast hits to 10818 proteins in 3011 species: Archae - 254; Bacteria - 5218; Metazoa - 451; Fungi - 193; Plants - 517; Viruses - 0; Other Eukaryotes - 4211 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1441-MONOMEREC:2.7.2.3eggNOG:COG0126eggNOG:KOG1367
EMBL:AC007202EMBL:AF247560EMBL:AF348582EMBL:AY062863
EMBL:BT008486EMBL:CP002684EnsemblPlants:AT1G79550EnsemblPlants:AT1G79550.1
EnsemblPlants:AT1G79550.2entrez:844293Gene3D:3.40.50.1260Gene3D:3.40.50.1270
GeneID:844293GO:GO:0004618GO:GO:0005524GO:GO:0005634
GO:GO:0005774GO:GO:0005829GO:GO:0005886GO:GO:0006096
GO:GO:0009506GO:GO:0009570GO:GO:0016020GO:GO:0048046
Gramene:AT1G79550.1Gramene:AT1G79550.2gramene_pathway:2.7.2.3gramene_pathway:CALVIN-PWY
gramene_pathway:GLYCOLYSISgramene_pathway:PWY-1042gramene_pathway:PWYQT-4428gramene_plant_reactome:1119519
gramene_plant_reactome:6877196HAMAP:MF_00145hmmpanther:PTHR11406hmmpanther:PTHR11406:SF9
InterPro:IPR001576InterPro:IPR015824InterPro:IPR015901KEGG:00010+2.7.2.3
KEGG:00710+2.7.2.3KEGG:ath:AT1G79550KO:K00927OMA:IEVKMAN
PANTHER:PTHR11406Pfam:PF00162PhylomeDB:Q9SAJ4PIR:H96826
PIRSF:PIRSF000724PRINTS:PR00477Proteomes:UP000006548Reactome:R-ATH-70171
Reactome:R-ATH-70263RefSeq:NP_178073.1RefSeq:NP_849907.1SMR:Q9SAJ4
STRING:3702.AT1G79550.1SUPFAM:SSF53748TAIR:AT1G79550tair10-symbols:PGK
UniGene:At.23890UniGene:At.67866unipathway:UPA00109UniProt:Q9SAJ4
Coordinates (TAIR10) chr1:-:29924347..29926295
Molecular Weight (calculated) 42134.20 Da
IEP (calculated) 5.34
GRAVY (calculated) 0.13
Length 401 amino acids
Sequence (TAIR10)
(BLAST)
001: MATKRSVGTL KEADLKGKSV FVRVDLNVPL DDNSNITDDT RIRAAVPTIK YLMGNGSRVV LCSHLGRPKG VTPKYSLKPL VPRLSELLGV EVVMANDSIG
101: EEVQKLVAGL PEGGVLLLEN VRFYAEEEKN DPEFAKKLAA LADVYVNDAF GTAHRAHAST EGVAKFLKPS VAGFLMQKEL DYLVGAVANP KKPFAAIVGG
201: SKVSTKIGVI ESLLNTVDIL LLGGGMIFTF YKAQGLSVGS SLVEEDKLDL AKSLMEKAKA KGVSLLLPTD VVIADKFAPD ANSKIVPATA IPDGWMGLDI
301: GPDSIKTFSE ALDTTKTIIW NGPMGVFEFD KFAAGTEAVA KQLAELSGKG VTTIIGGGDS VAAVEKVGLA DKMSHISTGG GASLELLEGK PLPGVLALDE
401: A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)