AT1G79400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.685 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cation/H+ exchanger 2 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of Putative Na+/H+ antiporter family | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cation/H+ exchanger 2 (CHX2); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: Cation/hydrogen exchanger family protein (TAIR:AT1G16380.1); Has 3598 Blast hits to 3570 proteins in 1038 species: Archae - 244; Bacteria - 2452; Metazoa - 34; Fungi - 130; Plants - 512; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:29864992..29867840 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 88209.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.85 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.29 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 783 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDPKLLLCLP QGDELFNPLN TMFIQMACIL VFSQLFYLLL KPCGQAGPVA QILAGIVLSP VLLSRIPKVK EFFLQKNAAD YYSFFSFALR TSFMFLIGLE 101: VDLHFMRRNF KKAAVITLSS FVVSGLLSFA SLMLFIPLFG IKEDYFTFFL VLLVTLSNTA SPVVVRSIAD WKLNTCEIGR LTISCALFIE LTNVVLYTII 201: MAFISGTIIL ELFLFLLATV ALILINMVLA PWLPKRNPKE KYLSKAETLV FFIFLLIIGI TIESYDVNSS VSVFAIGIMF PRQGKTHRTL IQRLSYPIHE 301: FVLPVYFGYI GFRFSIIALT KRFYLGIVII VIVTIAGKFI GVISACMYLK IPKKYWLFLP TILSVKGHVG LLLLDSNYSE KKWWTTTIHD MMVAALVITT 401: LVSGVLASFL LKTREKDFAY EKTSLESHNT NEELRILSCA YGVRHARGAI SLVSALSGSR GASDPFTPLL MHLVPLPKKR KSELMYHEHD EDGGNANGDD 501: EFGTNEGLEI NDSIDSFAKD SKILIQQVKL VTQMLNMHEE ICNATEDLRV SIVFLPFHKH QRIDGKTTND GELFRQMNRN VLRHGPCSIG IFVDRNITGF 601: QQPHGFDSVQ HVATLFFGGP DDREALALCR WLANNTLIHL TVIQFVSEES KAETPVGNAM TRDNNEVFME VLGRNQTEQE TDRSFLEEFY NRFVTTGQVG 701: FIEKLVSNGP HTLTILREIG EMYSLFVVGK STGDCPMTVR MKDWEECPEL GTVGDFLASS LDVNASVLVV QRQRHSHDSF IDD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)