AT1G79330.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : metacaspase 5 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Metacaspase AtMCPb2/AMC6. Caspase family protein. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam domain, PF00656: ICE-like protease (caspase) p20 domain. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
metacaspase 5 (MC5); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: induction of apoptosis; LOCATED IN: chloroplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 4 (TAIR:AT1G79340.1); Has 1246 Blast hits to 1206 proteins in 288 species: Archae - 3; Bacteria - 374; Metazoa - 2; Fungi - 283; Plants - 322; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:29838722..29840137 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44848.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.59 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 410 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKKAVLIGI NYPGTKAELR GCVNDVRRVH KSLVDRFGFS ERNITELIDT DESSTKPTGK NIRRALLNLV ESAKPGDVLV VHYSGHGTRL PAETGEDDDT 101: GYDECIVPCD MNLITDDEFR DLVEKVPKEA HITIISDSCH SGGLIDEAKE QIGESTKKKP KKESGGSSGL GIKGFVREAV EEALESKGIA IPHHKDEKDE 201: NKTKELKLED GAKVHVVNKS LPLQTLIDIL KQNTGNNDIE VGKIRPTLFN VFGEDASPKV KKFMKVILTK LQEGKTEGGI LGMIGKLAQE FLKHKLNDDE 301: EYVKPAMKTH VGNKQEVYAG ASNGSLADNG ILISGCQTDQ TSADASPQGH PEMAYGAFTN AVQIILEETK GMITYKELVL KARKLLKKQG FSQRPGLYCS 401: DSFVNAPFIC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)