AT1G79280.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nuclear pore anchor | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a 237-kDA protein with similarity to vertebrate Tpr, a long coiled-coil proteins of nuclear pore inner basket filaments. It is localized to the inner surface of the nuclear envelope and is a component of the nuclear pore-associated steps of sumoylation and mRNA export in plants. Mutations affect flowering time regulation and other developmental processes. Probably acts in the same pathway as ESD4 in affecting flowering time, vegetative and inflorescence development. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
nuclear pore anchor (NUA); CONTAINS InterPro DOMAIN/s: Tetratricopeptide, MLP1/MLP2-like (InterPro:IPR012929). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:29819176..29832809 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 239327.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.73 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.90 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 2115 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MPLFMPDEEL ARLSSDAASV VAERADEYIR KIYAELDSVR AKADAASITA EQTCSLLEQK YLSLSQDFSS LESQNAKLQS DFDDRLAELA QSQAQKHQLH 0101: LQSIEKDGEV ERMSTEMSEL HKSKRQLMEL LEQKDAEISE KNSTIKSYLD KIVKLTDTSS EKEARLAEAT AELARSQAMC SRLSQEKELT ERHAKWLDEE 0201: LTAKVDSYAE LRRRHSDLES EMSAKLVDVE KNYIECSSSL NWHKERLREL ETKIGSLQED LSSCKDAATT TEEQYTAELF TANKLVDLYK ESSEEWSRKA 0301: GELEGVIKAL EARLSQVESS YKERLDKEVS TKQLLEKENG DLKQKLEKCE AEIEKTRKTD ELNLIPFSNF TRRVDNSGTS NMIEESQAVI SKVPAGVSGT 0401: ALAASLLRDG WSLAKIYEKY QEAVDAMRHE QLGRKEAEMI LQRVLSELEE KAGFIQEERG EYERVVEAYC LVNQKLQDSV SEQSNMEKFI MELKADLRRR 0501: ERENTLLQKD ISDLQKQVTI LLKECRDVQL RCGAARDDDE DDYPLLSDVE MEMESEADKI ISEHLLKFKD INGLVEQNVK LRNLVRSLSE QIESRETELK 0601: ETFEVDLKNK TDEASAKVAT VLKRAEEQGQ MIESLHTSVA MYKRLYEEEQ KLHSSDSRSS DLSPAVVPGR KNFLHLLEDS EEATKRAQEK AFERIRILEE 0701: DFAKARSEVI AIRSERDKLA MEANFAREKL EGIMKESERK REEMNSVLAR NIEFSQLIID HQRKLRESSE SLHAAEEISR KLSMEVSVLK QEKELLSNAE 0801: KRASDEVSAL SQRVYRLQAT LDTVQSTEEV REETRAAERR KQEEHIKQLQ REWAEAKKEL QEERSNARDF TSDRNQTLNN AVMQVEEMGK ELANALKAVS 0901: VAESRASVAE ARLSDLEKKI RSSDPKTLDM DSGGIVSLSD KEAALVIILD VVHKIQAGFR IGSAMSIELR TAKEEIEKLR GEVESSKSHM LQYKSIAQVN 1001: ETALKQMESA HENFRLEAEK RQRSLEAELV SLRERVSELE NDCIQKSEQL ATAAAGKEDA LLSASAEIAS LREENLVKKS QIEAMNIQMS TLKNDLETEH 1101: EKWRVAQRNY ERQVILLSET IQELTKTSQA LAALQEEASE LRKLADARGI ENSELNAKWS EEKLMLEQQK NLAEKKYHEL NEQNKLLHSR LEAKHLNSAE 1201: KNSRSGTISS GSTDSDHLED SGLQRVVHYL RRTKEIAETE ISLMRQEKLR LQSQLESALK MAESARGSLT AERASTRASL LTDDGIKSLQ LQVSEMNLLR 1301: ESNMQLREEN KHNFEKCQEM REVAQKARME SENFENLLKT KQTELDLCMK EMEKLRMETD LHKKRVDELR ETYRNIDIAD YNRLKDEVRQ LEEKLKAKDA 1401: HAEDCKKVLL EKQNKISLLE KELTNCKKDL SEREKRLDDA QQAQATMQSE FNKQKQELEK NKKIHYTLNM TKRKYEKEKD ELSKQNQSLA KQLEEAKEEA 1501: GKRTTTDAVV EQSVKEREEK EKRIQILDKY VHQLKDEVRK KTEDLKKKDE ELTKERSERK SVEKEVGDSL TKIKKEKTKV DEELAKLERY QTALTHLSEE 1601: LEKLKHADGN LPEGTSAVQV LSGSILNDQA AAYVSAVEYF ERVARSIASN SQVSTKPTDM VTEPSSGIPA AEPSTMTRVP SSTPLIKSPV ATTQQLPKVA 1701: SDNKEKRLIS QKPSTEFRRP SGRRIVRPQL VKPEESPKVD VDMPEAEGTG DEGKQPAAHE PESQVTTSVR PVQTLVRKRQ ADSLVSEPQQ DSLTQGETSS 1801: EIAPPASKKA KGSESHPDTS EGENLAKEPA IDELMDATTT TDGDNEETEA ENAEEKTEEY VEAQQDNEAD EPVEESPTET ETIPTEEESR DQTEEENQEP 1901: LTDMESDKEE GELDLDTLED LEEGTDVASM MRSPEKEEVQ PETLATPTQS PSRMETAMEE AETTIETPVE DDKTDEGGDA AEEAADIPNN ANDQQEAPET 2001: DIKPETSAAT TSPVSTAPTT SSTLASAITS SGAPETEDPK RAPSPGGGSS TIVTLADRAQ MKRRERIANI VVSRAPNPAT RGARGRTVNL RGGGRLLPRG 2101: GRAPRGGRGQ SPSPP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)