AT1G79090.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167); BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:29749551..29752945 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 88845.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.58 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||||||
| Length | 793 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDAFGIGSSL NQAPVTQDLK KFGDNSTGNT MFDASQYAFF GNDVVEEVEL GGLEEEDEIL SFTGIAEDFS FDKEEVGDSR LLSDVDDLAS TFSKLNREPD 101: VYSNTGPITD RRSSQNSLAA EWTHGEELPN WYGRQILDSD AIKDDKVWSA QPFSSLDRVE QRIPDRTKLY PEPQRQLHQD HNQQQFSSEP ILVPKSSFVS 201: YPPPGSISPD QRLGHPNIPY QSGGPQMGSP NFSPFPNLQP QLPSMHHGSP QHTGNRPQFR PALPLNNLPP AQWMNRQNMH PGDSSGIMNN AMLQQPPHQN 301: GLMPPQMQGS QNRLPHPMQP PLGHMPGMQP QLFNSHLSRS SSSGNYDGML GFGDLREVRP GSGHGNRQNV RFPQQGFDAG VQRRYPFRSK YMSAGEIENI 401: LRMQLVATHS NDPYVDDYYH QACLAKKSAG AKLKHHFCPN HLRDLQQRAR SNNEPHAFLQ VEALGRVPFS SIRRPRPLLE VDPPNSAKFG NAEHKPTDKP 501: LDQEPMLAAR VYIEDGLCLL LEVDDIDRFL EFNQLQDGGH QLKQRRQALL QSLAVSLQLG DPLAKNGQSQ SLDDFLFLRV ISLPKGRKLL IRYLQLIFPG 601: SDLMRIVCMA IFRHLRSLFG VLSSDPDIIK TTNKLATVIN LCIQNMELGP VSTCLAAVSC SSEQAPLRPL GSPVGDGAST VLKSILDRAS ELIRANNFNN 701: AGIALWRASF NEFFNMLMRY CISKYDSIMQ SLQLPPHFAT EISEEAAKAI VREMPIELLR SSFPHIDEQQ KRILMEFLKR SMLGSQKTEP VLS |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)