suba logo
AT1G78990.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.964
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HXXXD-type acyl-transferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT1G32910.1); Has 2253 Blast hits to 2240 proteins in 120 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 21; Plants - 2228; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGWQeggNOG:ENOG410YESSEMBL:CP002684EnsemblPlants:AT1G78990
EnsemblPlants:AT1G78990.1entrez:844239Gene3D:3.30.559.10GeneID:844239
GO:GO:0016747Gramene:AT1G78990.1hmmpanther:PTHR31642hmmpanther:PTHR31642:SF6
InParanoid:F4IDH0InterPro:IPR003480InterPro:IPR023213KEGG:ath:AT1G78990
OMA:WGRPAFAPaxDb:F4IDH0Pfam:PF02458PRIDE:F4IDH0
ProteinModelPortal:F4IDH0Proteomes:UP000006548RefSeq:NP_178020.1SMR:F4IDH0
TAIR:AT1G78990UniGene:At.66148UniProt:F4IDH0
Coordinates (TAIR10) chr1:-:29713531..29714969
Molecular Weight (calculated) 50917.20 Da
IEP (calculated) 6.79
GRAVY (calculated) -0.12
Length 455 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEAAEQARG FHVTTTRKQV ITAALPLQDH WLPLSNLDLL LPPLNVHVCF CYKKPLHFTN TVAYETLKTA LAETLVSYYA FAGELVTNPT GEPEILCNNR
101: GVDFVEAGAD VELRELNLYD PDESIAKLVP IKKHGVIAIQ VTQLKCGSIV VGCTFDHRVA DAYSMNMFLL SWAEISRSDV PISCVPSFRR SLLNPRRPLV
201: MDPSIDQIYM PVTSLPPPQE TTNPENLLAS RIYYIKANAL QELQTLASSS KNGKRTKLES FSAFLWKLVA EHAAKDPVPI KTSKLGIVVD GRRRLMEKEN
301: NTYFGNVLSV PFGGQRIDDL ISKPLSWVTE EVHRFLKKSV TKEHFLNLID WVETCRPTPA VSRIYSVGSD DGPAFVVSSG RSFPVNQVDF GWGSPVFGSY
401: HFPWGGSAGY VMPMPSSVDD RDWMVYLHLT KGQLRFIEEE ASHVLKPIDN DYLKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)