AT1G78720.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : SecY protein transport family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SecY protein transport family protein; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein secretion, protein transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.10 ten leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208), Translocon Sec61/SecY, plug domain (InterPro:IPR019561); BEST Arabidopsis thaliana protein match is: SecY protein transport family protein (TAIR:AT2G34250.2); Has 4820 Blast hits to 4813 proteins in 2037 species: Archae - 276; Bacteria - 3174; Metazoa - 262; Fungi - 229; Plants - 171; Viruses - 0; Other Eukaryotes - 708 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:29605629..29607510 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52134.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.30 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.53 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 475 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVGGFRVIHL VRPFLAFLPE VQSPERKIPF REKVIYTVIS LFIFLVCSQL PLYGIHSTTG ADPFYWMRVI LASSRGTVME LGITPIVTSG MVMQLLAGSK 101: IIEIDNNVRE DRALLNGAQK LLGILIAVGQ AVAYVLSGMY GSVGELGVGN AILIIVQLCF AAIIVLCLDE LLQKGYGLGS GISLFIATNI CESIIWKAFS 201: PTTINSGRGA QFEGAVIALF HLLITRTDKV RALREAFFRQ NLPNVTNLHA TVLIFLIVIY FQGFRVVLPV RSKNARGQRG SYPIKLFYTS NMPIILQSAL 301: VSNIYFISQI LYRKFGGNFL VNLIGTWKES EYSGQSIPVG GIAYYITAPS SLAEMATHPF HALFYLVFML AACALFSKTW IEVSGSSAKD VARQLREQQM 401: VMPGHRDSNL QKELNRYIPT AAAFGGLCIG ALTVLADLMG AIGSGTGILL AVTIIYQYFE TFEKEKASEL GFFGL |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)