AT1G78640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.993 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT2G33720.1); Has 92 Blast hits to 55 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:29579715..29581988 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55279.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.36 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.67 | ||||||||||||||||||||||||||||||||
| Length | 487 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEEQREISH ENNVSLGSAE TAIPLTNVSI SPTKKEEQKT VYLVLFGRTI YVESSSLESE ETVMPIVDVP KSPAKEDLTT HCSLDAESSE KGFPVDPYMG 101: ILGNNPNINS NVTCAGNKDL TEDIIKFKKM RSLSKEKIVE EKGTRVLTEL PPYTWTIKKT LKESDINHQC RLLLNTTDAE NHIMRHLPTD DQKKIQEGIG 201: VDVKAYDHDT YTEHDMVFKR HVKTSKSYVF NGGWAKAFVG RRELKEGDKI GLFWAKKSQT FMSQEQQGTS PLNTDEALKS HHSFSQNPNY IESNLSRRYQ 301: TNFSLGSQRI SGQFLMIPNP GFVDTSSMTN THDTSLANFQ TVPTTTNPKI ILKEEKENEE EQQYWTIKKE LTKSDACQRL TLSKSSVEEH ILKHLLPEDS 401: QKIDKGKPGI TVKVYDNDTD TEHELCLAFQ CSYVLKNGWV KTFVKRRGLE EGDMIGLFWE CSTSKLHFSV LFRVNAKAPA AEEKEAY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)