AT1G78400.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Pectin lyase-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT2G33160.1); Has 3713 Blast hits to 3693 proteins in 464 species: Archae - 4; Bacteria - 847; Metazoa - 14; Fungi - 1259; Plants - 1481; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:29498281..29499682 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44121.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.26 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||
| Length | 404 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVSTISGFSL ILFIAAVASS ISAAPSAALV GRKVFDVRSY GARGDGKTDN TMAFTKAWKD ACQWKGLPRV YIPFGTFYLG AVAFTGPCKS RISFIIKGTL 101: LAPKDPNAIK QDSWIIFRYV DYLTVSGGGI LDGQGSYSWP LNNCRQTHNC RALPMNMGFQ FVRFSRLTRI KSINSKMGHL NFFSVQHFDI TRVNIKAPGD 201: SPNTDGIKIG SSNHMKIHHV DIATGDDCIA ILSGTFNLDI NKVNCGPGHG ISVGSLGKFK GEKSVQGLIV RNSIFNGTSN GVRIKTWPSP GEPNLVSNFL 301: FKNLQMIDVQ SPINIDQRYC PNPPCSFQSF SKIQIRDVKF QNIWGTSTAK EAVKLQCSKN VPCKNVQLFN INIVHRGRDG PATSVCENVG GWIGGKISPP 401: SCIR |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)