AT1G78390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.912 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nine-cis-epoxycarotenoid dioxygenase 9 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
nine-cis-epoxycarotenoid dioxygenase 9 (NCED9); CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 3 (TAIR:AT3G14440.1); Has 2892 Blast hits to 2853 proteins in 497 species: Archae - 16; Bacteria - 810; Metazoa - 240; Fungi - 201; Plants - 889; Viruses - 0; Other Eukaryotes - 736 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:29490895..29492868 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73019.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.06 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 657 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTIITIISGM YIYSLLSQDA HHSQYGQNTN LVLKKPIPKP QTAAFNQEST MASTTLLPST STQFLDRTFS TSSSSSRPKL QSLSFSSTLR NKKLVVPCYV 101: SSSVNKKSSV SSSLQSPTFK PPSWKKLCND VTNLIPKTTN QNPKLNPVQR TAAMVLDAVE NAMISHERRR HPHPKTADPA VQIAGNFFPV PEKPVVHNLP 201: VTGTVPECIQ GVYVRNGANP LHKPVSGHHL FDGDGMVHAV RFDNGSVSYA CRFTETNRLV QERECGRPVF PKAIGELHGH LGIAKLMLFN TRGLFGLVDP 301: TGGLGVANAG LVYFNGHLLA MSEDDLPYHV KVTQTGDLET SGRYDFDGQL KSTMIAHPKI DPETRELFAL SYDVVSKPYL KYFRFTSDGE KSPDVEIPLD 401: QPTMIHDFAI TENFVVIPDQ QVVFRLPEMI RGGSPVVYDE KKKSRFGILN KNAKDASSIQ WIEVPDCFCF HLWNSWEEPE TDEVVVIGSC MTPPDSIFNE 501: HDETLQSVLS EIRLNLKTGE STRRPVISEQ VNLEAGMVNR NLLGRKTRYA YLALTEPWPK VSGFAKVDLS TGEIRKYIYG EGKYGGEPLF LPSGDGEEDG 601: GYIMVFVHDE EKVKSELQLI NAVNMKLEAT VTLPSRVPYG FHGTFISKED LSKQALC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)