AT1G77960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28630.4); Has 13187 Blast hits to 6837 proteins in 407 species: Archae - 0; Bacteria - 447; Metazoa - 4509; Fungi - 1333; Plants - 399; Viruses - 45; Other Eukaryotes - 6454 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:29310465..29312973 | ||||||||||||||||
| Molecular Weight (calculated) | 48171.70 Da | ||||||||||||||||
| IEP (calculated) | 9.53 | ||||||||||||||||
| GRAVY (calculated) | -0.88 | ||||||||||||||||
| Length | 420 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSGDMFDDQS PLLSPLCFLE SPEPCIPLLD CLPNSTVETE KPYVDPFGLV PVSTIDETNL LLSSQQSNLV TYQETSTLVP KPLEMHQNQN QNQHQHQNQN 101: QHQHQHQYQN QHQHQYQNQH QHRVVQQQQQ QQLINSHETW LQDKLSNMLN TIQQESSVFT RNQTEIGQQV RQANNGFAHP TVTNSPLQLQ NRFLPVPLIP 201: QHRSNAFGSL FPQTMGSARP QNYMPYQTPH QQVSSSFGMY PQQPRPPVFV RRQNEPPNIR MVNNNALTRI HPLQNQTNMI PPFNAVPQRT IPRPQMSSRL 301: FTRQHGGMQT SVNQSPLRFR LPNINNRQAP VRPNANAIIP PQGEILGCRR RSYPSRFEFG QSSSSSAQRR RIVPASENVG STSINHGNAE QRGTNTIYDP 401: RYESFGLCID PHLRKYAMTL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)