AT1G77860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Rhomboid-related intramembrane serine protease family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
mutant has Altered morphology of pollen exine wall; Seven-Path Transmembrane Protein | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
KOMPEITO (KOM); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like 1 (TAIR:AT2G29050.1); Has 4976 Blast hits to 4975 proteins in 1564 species: Archae - 94; Bacteria - 3058; Metazoa - 485; Fungi - 120; Plants - 306; Viruses - 0; Other Eukaryotes - 913 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:29282643..29284458 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39317.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.71 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.33 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 351 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEVPTESKTT QIDEISHNLS FTTSNAGDSS WDKISFFRHR SRQIKRDTWL VSVFVLLQIV LFAVTMGVND CSGNSHGHCS AKLLGRFSFQ SLSENPMLGP 101: SASTLEHMGG LSWKALTENH EIWRILTSPW LHSGLFHLFI NLGSLIFVGI YMEQQFGPLR IAVIYFLSGI MGSLFAVLFV RNIPSISSGA AFFGLIGAML 201: SALAKNWNLY NSKISALAII FTIFTVNFLI GFLPFIDNFA NIGGFISGFL LGFVLLFKPQ LRQMPPSHKG KLFEDDMNRS TRLKEQFDRP VLRIICLLVF 301: CGILAGVLLA ACWGVNLNRH CHWCRYVDCV PTKKWSCSDM TTSCEVYSSK P |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)