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AT1G77855.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.716
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22030.1); Has 120 Blast hits to 120 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVZCeggNOG:ENOG41105EVEMBL:CP002684EnsemblPlants:AT1G77855
EnsemblPlants:AT1G77855.1entrez:844121GeneID:844121GO:GO:0016021
Gramene:AT1G77855.1hmmpanther:PTHR31509hmmpanther:PTHR31509:SF2InParanoid:F4I8K1
iPTMnet:F4I8K1KEGG:ath:AT1G77855OMA:AGIHECAPaxDb:F4I8K1
PRIDE:F4I8K1Proteomes:UP000006548RefSeq:NP_683505.1STRING:3702.AT1G77855.1
TAIR:AT1G77855TMHMM:TMhelixUniGene:At.50663UniProt:F4I8K1
Coordinates (TAIR10) chr1:-:29277244..29278388
Molecular Weight (calculated) 36245.80 Da
IEP (calculated) 7.44
GRAVY (calculated) -0.30
Length 317 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQSCSNSVN GFYSFLNRSM EDLERVYISN NFMSLQFLQR VICLLRTSHS HLTLLVQKLN LPVGDKWLDD YMDETSKLWD VCHVIKSAIS TIESFCSSAI
101: SITSTLDGHY HHRRLLSPQI SRQVIRAISG CRREAVGIEE ENRALMENRI QRFPFWSEQV TTTGMESSKI QNGFSGFRGV MNTMKNINSL LLVILMQGLV
201: YYIPGDTTVP TGTMMRLKQR VAAEMERIGV RKGMMMYEYR RSKTAMEELK VELERRCCGG GGEEEAVEKG LRERIENLKG SVGSLRNGTE SIVAQIDDFF
301: DDIVDGRKML LDYCSHR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)