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AT1G77840.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Translation initiation factor IF2/IF5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Translation initiation factor IF2/IF5; FUNCTIONS IN: binding, translation initiation factor activity; INVOLVED IN: translational initiation, regulation of translational initiation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF2/IF5, N-terminal (InterPro:IPR016189), Translation initiation factor IF2/IF5, zinc-binding (InterPro:IPR016190), eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Translation initiation factor IF2/IF5 (InterPro:IPR002735), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Translation initiation factor IF2/IF5 (TAIR:AT1G36730.1); Has 4597 Blast hits to 3869 proteins in 471 species: Archae - 198; Bacteria - 234; Metazoa - 1589; Fungi - 711; Plants - 391; Viruses - 12; Other Eukaryotes - 1462 (source: NCBI BLink).
Protein Annotations
DNASU:844119eggNOG:COG1601eggNOG:KOG2767EMBL:AC009243
EMBL:AC012193EMBL:AY062694EMBL:AY065097EMBL:AY114664
EMBL:BT002163EMBL:CP002684EnsemblPlants:AT1G77840EnsemblPlants:AT1G77840.1
entrez:844119Gene3D:1.25.40.180Gene3D:3.30.30.50GeneID:844119
Genevisible:Q9S825GO:GO:0003743GO:GO:0005525GO:GO:0005634
GO:GO:0005737Gramene:AT1G77840.1hmmpanther:PTHR23001hmmpanther:PTHR23001:SF8
HOGENOM:HOG000214327InParanoid:Q9S825InterPro:IPR002735InterPro:IPR003307
InterPro:IPR016021InterPro:IPR016024InterPro:IPR016189InterPro:IPR016190
iPTMnet:Q9S825KEGG:ath:AT1G77840KO:K03262OMA:RITLDCK
PaxDb:Q9S825Pfam:PF01873Pfam:PF02020Pfam:Q9S825
Pfscan:PS51363PhylomeDB:Q9S825PRIDE:Q9S825PRO:PR:Q9S825
PROSITE:PS51363ProteinModelPortal:Q9S825Proteomes:UP000006548Reactome:R-ATH-72702
RefSeq:NP_177907.1SMART:SM00515SMART:SM00653SMR:Q9S825
STRING:3702.AT1G77840.1SUPFAM:SSF100966SUPFAM:SSF48371SUPFAM:SSF75689
TAIR:AT1G77840UniGene:At.27261UniProt:Q9S825
Coordinates (TAIR10) chr1:+:29269087..29270400
Molecular Weight (calculated) 48642.60 Da
IEP (calculated) 5.26
GRAVY (calculated) -0.74
Length 437 amino acids
Sequence (TAIR10)
(BLAST)
001: MALQNIGASN RNDAFYRYKM PKMVTKTEGK GNGIKTNIIN NVEIAKALAR PPSYTTKYFG CELGAQSKFD EKTGTSLVNG AHNTSKLAGL LENFIKKFVQ
101: CYGCGNPETE IIITKTQMVN LKCAACGFIS EVDMRDKLTN FILKNPPEQK KVSKDKKAMR KAEKERLKEG ELADEEQRKL KAKKKALSNG KDSKTSKNHS
201: SDEDISPKHD ENALEVDEDE DDDDGVEWQT DTSREAAEKR MMEQLSAKTA EMVMLSAMEV EEKKAPKSKS NGNVVKTENP PPQEKNLVQD MKEYLKKGSP
301: ISALKSFISS LSEPPQDIMD ALFNALFDGV GKGFAKEVTK KKNYLAAAAT MQEDGSQMHL LNSIGTFCGK NGNEEALKEV ALVLKALYDQ DIIEEEVVLD
401: WYEKGLTGAD KSSPVWKNVK PFVEWLQSAE SESEEED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)