AT1G77780.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Glycosyl hydrolase superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT1G77790.1); Has 2108 Blast hits to 2097 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 2094; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:29248437..29249528 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40267.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.56 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.03 | ||||||||||||||||||||||||||||||||||||
| Length | 363 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFLIATLLFL SARLTTAGNM NSFAGVCYGR NGDNLPSPAK TVSLYKKINV GGIRLYEPFP DLIVSLQGTG LLVAIGPRNE AIKTLAEEYQ FALNWDKTFI 101: APYKNVAFNW ITVGNEVIEG EIGRYVPQAM KNIKAALTEI GNSKIHVTTV ISTAALANSY PPSAGVFKPA ITELITEIVS ILSSTDSPLM VNVYPYFAYA 201: SDPSHVSLEY ATFRSTSPVV TDGKYQYTNI FDATLDAFNV ALEKINHGSV KVYVAETGWP TRGNDPYTSV ENARAYNQGL LKKLTTGKGT PRRPNVPVIT 301: FFFEMFNEDL KQGAVEQSFG FFDPNMAPVY DMWNIARTSN ASPSWVIWTN WVIWTMLITR LFY |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)